2022

Dynamic multi feature-class Gaussian process models

Authors: Jean-Rassaire Fouefack, Bhushan Borotikar, Marcel Lüthi, Tania S Douglas, Valérie Burdin, Tinashe EM Mutsvangwa

Journal: Medical Image Analysis I Publication date: 27/12/2022

ISSN No.: 1361-8415 I Issue -01/Volume-85 /@ Publisher: Elsevier

https://doi.org/10.1016/j.media.2022.102730

Federated learning enables big data for rare cancer boundary detection

Authors: Sarthak Pati, Ujjwal Baid, Brandon Edwards, Micah Sheller, Shih-Han Wang, G Anthony Reina, Patrick Foley, Alexey Gruzdev, Deepthi Karkada, Christos Davatzikos, Chiharu Sako, Satyam Ghodasara, Michel Bilello, Suyash Mohan, Philipp Vollmuth, Gianluca Brugnara, Chandrakanth J Preetha, Felix Sahm, Klaus Maier-Hein, Maximilian Zenk, Martin Bendszus, Wolfgang Wick, Evan Calabrese, Jeffrey Rudie, Javier Villanueva-Meyer, Soonmee Cha, Madhura Ingalhalikar, Manali Jadhav, Umang Pandey, Jitender Saini.

Journal: Nature Communications | Publication date: 2022/12/05

ISSN No.: 2041-1723 I Issue -01/Volume-13 /@ Nature Publishing Group 2022

https://doi.org/10.1038/s41467-022-33407-5

Editorial: It Is a Matter of Matters: Deciphering Structural and Functional Brain Connectivity

Authors: Gopikrishna Deshpande, Vinoo Alluri, Aaryana Sharma and Madhura Ingalhalikar

Journal: Frontiers in Neuroscience | Publication date: 2022/06/16

ISSN No.: 1662-4548/@ 2022 Frontiers

https://doi.org/10.3389/fnins.2022.951001

Generalizable multi-task, multi-domain deep segmentation of sparse pediatric imaging datasets via multi-scale contrastive regularization and multi-joint anatomical priors

Authors: Arnaud Boutillon, Pierre-Henri Conze, Christelle Pons, Valérie Burdin, Bhushan Borotikar

Journal: Medical Image Analysis | Publication date: 2022/08/06

ISSN No.: 1361-8415/© 2022 Elsevier

https://doi.org/10.1016/j.media.2022.102556

Multi-structure bone segmentation in pediatric MR images with combined regularization from shape priors and adversarial network

Authors: Arnaud Boutillon, Bhushan Borotikar, Valérie Burdin, Pierre-Henri Conze

Journal: Artificial Intelligence in Medicine | Publication date : 2022/07/19

ISSN No.: 0933-3657/© 2022 Elsevier

https://doi.org/10.1016/j.artmed.2022.102364

Optimal definitions for computing HKA angle in caos: an in-vitro comparison study

Authors: Guillaume Dardenne, Bhushan Borotikar, Hoel Letissier, Ahmed Zemirline, Eric Stindel

Journal: Computer Assisted Surgery I Publication date: 2022/12/31 I Volume: 27 I Issue: 1

https://doi.org/10.1080/24699322.2022.2066023

Assessment and comparison of image quality between two real-time sequences for dynamic MRI of distal joints at 3.0 Tesla

Authors: Marc Garetier, Jean Rousset, Karim Makki, Sylvain Brochard, François Rousseau, Douraïed Ben Salem, Bhushan Borotikar

Journal: Acta Radiologica

https://doi.org/10.1177/02841851221101889

Anatomically Parameterized Statistical Shape Model: Explaining Morphometry through Statistical Learning  

Authors: Arnaud Boutillon, Asma Salhi, Valérie Burdin, Bhushan Borotikar

Journal: IEEE Transactions on Biomedical Engineering

DOI: 10.1109/TBME.2022.3152833

Multimodal Brain Connectomics-Based Prediction of Parkinson’s Disease Using Graph Attention Networks  

Authors: Apoorva Safai, Nirvi Vakharia, Shweta Prasad, Jitender Saini, Apurva Shah, Abhishek Lenka, Pramod Kumar Pal, Madhura Ingalhalikar

Journal: Frontiers in Neuroscience

https://doi.org/10.3389/fnins.2021.741489

Neurite orientation dispersion and density imaging in cocaine use disorder  

Authors: Jalil Rasgado-Toledo, Apurva Shah, Madhura Ingalhalikar, Eduardo A Garza-Villarreal

Journal: Progress in Neuro-Psychopharmacology and Biological Psychiatry I Publication date: 2022/3/8 I Volume: 113

https://doi.org/10.1016/j.pnpbp.2021.110474

A Musculoskeletal Model Customized for Sagittal and Frontal Knee Kinematics with Improved Knee Joint Stability  

Authors: Shivangi Giri, RP Tewari, Asma Salhi, Mathieu Lempereur, Bhushan Borotikar

Journal: Journal of Biomechanical Engineering I Publication date: 2022/1/26

https://doi.org/10.1115/1.4053666

Comprehensive personalized ankle joint shape analysis of children with cerebral palsy from pediatric MRI

Authors: Yue Cheng, Rodolphe Bailly, Claire Scavinner-Dorval, Benjamin Fouquet, Bhushan Borotikar, Douraied Ben Salem, Sylvain Brochard and François Rousseau

Journal: Frontiers in Bioengineering and Biotechnology | Publication date: 25/11/2022

ISSN No.: 2296-4185 /@ 2022 Frontiers

https://doi.org/10.3389/fbioe.2022.1059129

Role of Arterial Spin Labeling (ASL) Images in Parkinson's Disease (PD): A Systematic Review

Authors: Dhanashri Joshi, Shweta Prasad, Jitender Saini, Madhura Ingalhalikar

Journal: | Academic Radiology | Publication date: 23/11/2022

ISSN No.: 1076-6332 /@ Elsevier 2022

2021

Disrupted structural connectome and neurocognitive functions in Duchenne muscular dystrophy: classifying and subtyping based on Dp140 dystrophin isoform 

Authors: Veeramani Preethish-Kumar, Apurva Shah, Kiran Polavarapu, Manoj Kumar, Apoorva Safai, Seena Vengalil, Saraswati Nashi, Sekar Deepha, Periyasamy Govindaraj, Mohammad Afsar, Jamuna Rajeswaran, Atchayaram Nalini, Jitender Saini, Madhura Ingalhalikar

Journal: Journal of Neurology I Publication date: 2021/9/10

https://doi.org/10.1007/s00415-021-10789-y

Comprehensive Genomic Subtyping of Glioma Using Semi-Supervised Multi-Task Deep Learning on Multimodal MRI  

Authors: Priyanka Tupe-Waghmare, Piyush Malpure, Ketan Kotecha, Manish Beniwal, Vani Santosh, Jitender Saini, Madhura Ingalhalikar

Journal: IEEE Access I Publication date: 2021/12/16 I Volume: 9

DOI: 10.1109/ACCESS.2021.3136293

Radiomics signature for temporal evolution and recurrence patterns of glioblastoma using multimodal magnetic resonance imaging  

Authors: Tanay Chougule, Rakesh K Gupta, Jitender Saini, Shaleen Agrawal, Mamta Gupta, Nirvi Vakharia, Anup Singh, Rana Patir, Sandeep Vaishya, Madhura Ingalhalikar

Journal: NMR in Biomedicine I Publication date: 2021 I Volume -35 I Issue-03

https://doi.org/10.1002/nbm.4647

A review of radiomics and deep predictive modeling in glioma characterization  

Authors: Sonal Gore, Tanay Chougule, Jayant Jagtap, Jitender Saini, Madhura Ingalhalikar

Journal: Academic Radiology I Publication date: 2021/11/1 I Volume: 28 I Issue: 11

https://doi.org/10.1016/j.acra.2020.06.016

Cobb angle estimation from AP X Ray Images using Region Proposal Neural Networks 

Prathmesh S. Choudhari, Madhura Ingalhalikar

International Journal of Scientific Research in Engineering and Management (IJSREM) Volume: 05 Issue: 07 | July - 2021 ISSN: 2582-3930

www.ijsrem.com

Ultrasound Ulnar Nerve Measurement in a Healthy Population

Hoel Letissier. Guillaume Dardenne. Alain Saraux, Dominique Le Nen, Bhushan Borotikar, Sandrine Jousse-Joulin

Journal: Rheumatology and therapy

https://doi.org/10.1007/s40744-021-00283-2.

Developing a Radiomics Signature for Supratentorial Extra-Ventricular

Ependymoma Using Multimodal MR Imaging

Apoorva Safai, Sumeet Shinde, Manali Jadhav, Tanay Chougule, Abhilasha Indoria, Manoj Kumar, Vani Santosh, Shumyla Jabeen, Manish Beniwal, Subhash Konar, Jitender Saini and Madhura Ingalhalikar

Journal: Frontiers in Neurology, Volume: 12

https://doi: 10.3389/fneur.2021.648092

Predictive and discriminative localization of pathology using high resolution class activation maps with CNNs

Sumeet Shinde, Priyanka Tupe-Waghmare, Tanay Chougule, Jitender Saini and Madhura Ingalhalikar

Journal: PeerJ Computer Science, Volume: 7

https://doi.org/10.7717/peerj-cs.622

Structural connectivity predicts sequential processing differences in music perception ability

Archith Rajan, Apurva Shah, Madhura Ingalhalikar, Nandini Chatterjee Singh

Journal: European Journal of Neuroscience

https://doi.org/10.1111/ejn.15407

Abnormal structural connectivity in progressive supranuclear palsy—Richardson syndrome

S Prasad, A Rajan, SA Pasha, S Mangalore, J Saini, M Ingalhalikar, ...

Acta Neurologica Scandinavica 143 (4), 430-440

https://doi.org/10.1111/ane.13372

Radiomics on routine T1-weighted MRI can delineate Parkinson’s disease from multiple system atrophy and progressive supranuclear palsy

P Tupe-Waghmare, A Rajan, S Prasad, J Saini, PK Pal, M Ingalhalikar

European Radiology, 1-10

https://link.springer.com/article/10.1007/s00330-021-07979-7

Functional connectivity-based prediction of Autism on site harmonized ABIDE dataset

M Ingalhalikar, S Shinde, A Karmarkar, A Rajan, D Rangaprakash, ...

IEEE Transactions on Biomedical Engineering

https://ieeexplore.ieee.org/abstract/document/9431695/authors#authors

Ischiofemoral impingement: the evolutionary cost of pelvic obstetric adaptation

EA Audenaert, K Duquesne, J De Roeck, T Mutsvangwa, B Borotikar, ...

Journal of Hip Preservation Surgery

https://academic.oup.com/jhps/advance-article/doi/10.1093/jhps/hnab004/6130740

2020

Aberrant global and local efficiency of the executive subnetwork in essential tremor

S Prasad, A Shah, J Saini, M Ingalhalikar, PK Pal

Journal of Neural Transmission

https://doi.org/10.1007/s00702-020-02141-x

Microstructural abnormalities of substantia nigra in Parkinson's disease: A neuromelanin sensitive MRI atlas based study

A Safai, S Prasad, T Chougule, J Saini, PK Pal, M Ingalhalikar

Human brain mapping 41 (5), 1323-1333

https://onlinelibrary.wiley.com/doi/full/10.1002/hbm.24878

Abnormalities in the white matter tracts in patients with Parkinson disease and psychosis

A Lenka, M Ingalhalikar, A Shah, J Saini, SS Arumugham, S Hegde, ...

Neurology 94 (18), e1876-e1884

https://doi.org/10.1212/WNL.0000000000009363

In Vivo Evaluation of White Matter Abnormalities in Children with Duchenne Muscular Dystrophy Using DTI

V Preethish-Kumar, A Shah, M Kumar, M Ingalhalikar, K Polavarapu, ...

American Journal of Neuroradiology 41 (7), 1271-1278

https://doi.org/10.3174/ajnr.A6604

A review of radiomics and deep predictive modeling in glioma characterization

S Gore, T Chougule, J Jagtap, J Saini, M Ingalhalikar

Academic Radiology

https://doi.org/10.1016/j.acra.2020.06.016

Normative Baseline for Radiomics in Brain MRI: Evaluating the Robustness, Regional Variations, and Reproducibility on FLAIR Images

U Pandey, J Saini, M Kumar, R Gupta, M Ingalhalikar

Journal of Magnetic Resonance Imaging

https://doi.org/10.1002/jmri.27349

2019

Predictive markers for Parkinson's disease using deep neural nets on neuromelanin sensitive MRI

S Shinde, S Prasad, Y Saboo, R Kaushick, J Saini, PK Pal, M Ingalhalikar

NeuroImage: Clinical 22, 101748

https://www.sciencedirect.com/science/article/pii/S2213158219300981

Abnormalities of white and grey matter in early multiple system atrophy: comparison of parkinsonian and cerebellar variants

SK Dash, A Stezin, T Takalkar, L George, NL Kamble, M Netravathi, ...

European radiology 29 (2), 716-724

https://doi.org/10.1007/s00330-018-5594-9

Abnormal hippocampal subfields are associated with cognitive impairment in essential tremor

S Prasad, A Shah, KS Bhalsing, KJ Kumar, J Saini, M Ingalhalikar, PK Pal

Journal of Neural Transmission 126 (5), 597-606

https://link.springer.com/article/10.1007/s00702-019-01992-3

Clinical correlates of abnormal subcortical volumes in Essential Tremor

S Prasad, A Shah, KS Bhalsing, M Ingalhalikar, J Saini, PK Pal

Journal of Neural Transmission 126 (5), 569-576

https://doi.org/10.1007/s00702-019-02004-0

Altered structural connectivity of the motor subnetwork in multiple system atrophy with cerebellar features

A Shah, S Prasad, B Rastogi, S Dash, J Saini, PK Pal, M Ingalhalikar

European radiology 29 (6), 2783-2791

https://doi.org/10.1007/s00330-018-5874-4

Wired for musical rhythm? A diffusion MRI-based study of individual differences in music perception

A Rajan, JM Valla, JA Alappatt, M Sharda, A Shah, M Ingalhalikar, ...

Brain Structure and Function 224 (5), 1711-1722

https://doi.org/10.1007/s00429-019-01868-y

HR-CAM: Precise Localization of pathology using multi-level learning in CNNs

S Shinde, T Chougule, J Saini, M Ingalhalikar

International Conference on Medical Image Computing and Computer-Assisted 

https://link.springer.com/chapter/10.1007/978-3-030-32251-9_33#citea

Atrophy of cerebellar peduncles in essential tremor: A machine learning–based volumetric analysis

S Prasad, U Pandey, J Saini, M Ingalhalikar, PK Pal

European radiology 29 (12), 7037-7046

https://doi.org/10.1007/s00330-019-06269-7

2018

Hippocampal subfield atrophy in patients with Parkinson’s disease and psychosis

A Lenka, M Ingalhalikar, A Shah, J Saini, SS Arumugham, S Hegde, ...

Journal of Neural Transmission 125 (9), 1361-1372

https://doi.org/10.1007/s00702-018-1891-3

DTI in essential tremor with and without rest tremor: Two sides of the same coin?

S Prasad, B Rastogi, A Shah, KS Bhalsing, M Ingalhalikar, J Saini, ...

Movement disorders: official journal of the Movement Disorder Society 33 (11 

https://doi.org/10.1002/mds.27459

2017

Altered brain wiring in Parkinson's disease: a structural connectome-based analysis.

A Shah, A Lenka, J Saini, S Wagle, RM Naduthota, R Yadav, PK Pal, Brain connectivity 7 (6), 347-356

https://doi.org/10.1089/brain.2017.0506